I just had this problem resolved, but it was by accident more than anything else. With the help of Pete K. here on this forum site, I had an emissions problem solved. There is a TSB for emissions problems that lead to my ignition coils almost completely metling. The original PCM (power control module) went out and caused my car to misfire. After taking it to a local Ford dealer, the problem was diagnosed and with the 8yr/ 80,000 mile emissions warranty, the problem was resolved. I had my (6) coils, (6) plugs and PCM replaced. But the PCM also controls the transfer sensor to the transmission, causing the "thumping" sound of the tranny. This had occured for the past year..so my thinking is that the PCM was already failing and when it finally did, not only was it effecting my transmission sensor, it caused the meltdown of the coils. I would suggest having the PCM replaced at the cost of the dealership before you get stranded or the emissions warranty expires. Please see my posts and/or the posts of Pete K. to get a copy of the TSB to take into your local Ford dealer. I hope this helps.